Hello, im a student mechanical engineering and I am making a 3d printer out off knex like this, [imgur.com]
Now i need help with controlling the motors and which hot end do i need to use?
Whatever you like. All electronics have the same basic feature set, can all drive the same extruders and all extruders/hotends are compatible with all electronics. Also, you likely want not only a hotend (which is where the filament is melted), but a whole extruder (which also has some mechanism to feed that filament into the hotend). Not every hotend fits into every extruder, they can differ in their way of mounting.
Are you going to use a heated bed? If not, then PLA is really you only option (and the only thing I print with). As for the hotend: [forums.reprap.org]