I recently installed the software and executed it. This is what I get:
Java 3D WARNING : reported GLX version = 1.2
GLX version 1.3 or higher is required
The reported version number may be incorrect. There is a known
ATI driver bug in glXQueryVersion that incorrectly reports the GLX
version as 1.2 when it really is 1.3, so Java 3D will attempt to
run anyway.
************************************************************************
*** ERROR: Canvas3D constructed with a null GraphicsConfiguration
*** This will cause a NullPointerException in a subsequent release
************************************************************************
java.lang.NullPointerException: Canvas3D: null GraphicsConfiguration
etc...
I have been searching for the source of the problem and came to an explanation.
The problem here is Xgl, that currently only implements GLX 1.2.
So if you are using any fancy stuff like Compiz/Beryl on top of Xgl you need to remove it and go back to the plain Xorg (I have to test it with AIGLX though).