had the same issue.
when make your firmware update you need to configure the Configuration.h file there should be a part like this:
// Inverting axis direction
const bool INVERT_X_DIR = true;
const bool INVERT_Y_DIR = false;
const bool INVERT_Z_DIR = false;
const bool INVERT_E_DIR = true;
so you can just invert movment esay.