Update. I am trying to burn the bootloared but keep receiving:
This report would have more information with
"Show verbose output during compilation"
enabled in File > Preferences.
Arduino: 1.0.5-r2 (Windows NT (unknown)), Board: "Sanguino W/ ATmega1284p 16mhz"
avrdude: stk500_getsync(): not in sync: resp=0x41,0x00,0xd1,0xd7 etc.