What controller are you using?
Errors like this are easilly adjusted for on the Duet using orthogonal correction M556 [
reprap.org]
RepRapPro Mendel 3 Tricolour
RepRapPro Fisher
-Carbon Arms
-Easy adjust Carriage+effector
-axis stiffness mods
HE3D -600 delta
-Duet 0.8.5
-PanelDue
-DC42 Height probe
-RobotDigg metal components
Simplyfy3D
RS Design Spark CAD