Have a look
here, check your alignment, wall thickness and so on with simple test cubes and objects with single walls (printing with "spiral vase").
Once you have done the initial calibration of filament, extrusion width and nozzle diameter the print should be in the same dimensions as your STL file.
For small holes make sure have the temperature for the filament right, too high and the walls can sag, especially when the overall size of the object is small.
You can help by installing a cooling fan pointed at the printed area around the nozzle.