Dual Extruder

I have two Extruders connected & working in manual mode.
The problem is that the G-Code produced by Slic3r isn't working when Extruder 2 is selected.
Extruder 2 is selected for Perimeter, Infil & Support material extruder in Extruder #2 generated code.
The code selects T0 instead of T1 for extruder two.
It should use T0 for Extruder #1 and T1 for Extruder #2. These codes are used when selecting Extruder in manual mode.

Extruder #1 Generated File. Works.
; generated by Slic3r 0.9.9 on 2013-05-29 at 15:45:20
G21 ; set units to millimeters
M107
M104 S220 ; set temperature

M109 S220 ; wait for temperature to be reached
G90 ; use absolute coordinates
G92 E0
M82 ; use absolute distances for extrusion
G1 Z-11.850 F3000.000
G1 F6000.000 E-1.00000
G1 Z-11.750
G92 E0
G1 X79.030 Y74.510 F3000.000
G1 Z-11.850
G1 F6000.000 E1.10000
G1 X79.510 Y74.030 F360.000 E1.13301
G1 X80.030 Y73.570 E1.16676
G1 X80.570 Y73.150 E1.20003
G1 X81.430 Y72.590 E1.24993
etc.

Extruder #2 Generated File. Dosen't Work unless I change the T0 to T1.
; generated by Slic3r 0.9.9 on 2013-05-29 at 15:47:59

G21 ; set units to millimeters
M107
M104 S220 T0 ; set temperature

M109 S220 T0 ; wait for temperature to be reached
G90 ; use absolute coordinates
G92 E0
M82 ; use absolute distances for extrusion
T0
G92 E0
G1 Z-11.850 F3000.000
G1 F6000.000 E-1.00000
G1 Z-11.750
G92 E0
G1 X79.030 Y74.510 F3000.000
G1 Z-11.850
G1 F6000.000 E1.10000
G1 X79.510 Y74.030 F360.000 E1.13301
G1 X80.030 Y73.570 E1.16676
G1 X80.570 Y73.150 E1.20003
G1 X81.430 Y72.590 E1.24993

Any assistance appreciated.

Not sure if I understand you. I guess you want to say that slic3r creates the wrong code, meaning it does not select the extruders you said to use.

In that case open slic3r and verify that the settings are really assigned to different extruders. I have the problem that the settings in slic3r often spring back to the one before when changing the extruder assignment. So perhaps you have the same problem. Told slic3r to use extruder 2 and it sprang back to 1 on save.

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Yes, Slic3r creates the wrong code unless I am missing something obvious.

I checked and settings are as set.

I can manually edit generated code and it will run correctly, just cant get Slic3r to do it.

Have you also defined that you have 2 Extruder in Printer Settings->General. If you do it at both places the code normally gets generated as expected.

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Repetier-Software - the home of Repetier-Host (Windows, Linux and Mac OS X) and Repetier-Firmware.
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Yes defined in printer settings too.

Then you should ask it in the slic3r forum. You should also post there screenshots of your configuration, because I think it is a wrong setting, also I do not know which if you set the two places right.

One last thing - have you also told the host you have 2 extruder and selected 2 filament profiles?

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Repetier-Software - the home of Repetier-Host (Windows, Linux and Mac OS X) and Repetier-Firmware.
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Hi repetier,

Yes I have told host I have 2 extruders & selected 2 filament profiles.

I will post to Slic3r forum as suggested.

Thank you for your help.

Rob.