okay it seems the config.h needs to have the steps changed from
#define DEFAULT_AXIS_STEPS_PER_UNIT {80,80,4000,500} // default steps per unit for Ultimaker
Where these are the steps/mm for X,Y Z and E axis
to
#define DEFAULT_AXIS_STEPS_PER_UNIT {80,80,2650,500} // default steps per unit for Ultimaker
Where these are the steps/mm for X,Y Z and E axis