Ok so in here with my hat in hand again. I have everything working except i can not get the start.gcode to load into the header when i slice a model.

I have it enabled under Alteration, and i have the file named correctly and have it located in the directory .../skeinforge_aplication/alterations .

What am i missing now.

Maybe your start.gcode is written in an invalid format. I would suggest to upload it so we can have a look. Unrelated example, repetier host does like spaces between the command and argurments, otherwise it will send G0 instead of G1X5Y70Z0.6

Did you try to locate your start file in home-directory/.skeinforge/alterations? Or an access authorization question maybe?

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François