Are you sure your repetier client is working correctly? Would try communicating with the printer directly through cura or some other program just as another check. I've also had failed firmware flashes if my usb chord runs too close the the printer power chords.
If you need some help, or don't understand what I just said, feel free to send me a PM anytime
Printer: Prusa i3, 2 E3D v6 Hotends, Arduino + RAMPS 1.4 with a Bypassed 5V Regulator, 400w Insignia ATX PSU, Custom Designed Bowden Extruders